Dec 082012
 

PSIST

:: DESCRIPTION

PSIST (protein structures using suffix trees) uses suffix trees to index protein 3D structure. It first converts the 3D structure into a structure-feature sequence over a new structural alphabet, which is then used to index protein structures. The PSIST index makes it very fast to query for a matching structural fragment.

::DEVELOPER

Mohammed J. Zaki

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / MacOsX

:: DOWNLOAD

 PSIST

:: MORE INFORMATION

Citation

Feng Gao and Mohammed J. Zaki,
PSIST: A Scalable Approach to Indexing Protein Structures using Suffix Trees.
Journal of Parallel and Distributed Computing, 68(1):55-63. Jan 2008

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