May 222014
 

PseudoDomain 20130916

:: DESCRIPTION

PseudoDomain is used to identify processed pseudogenes of mammalian genomes. Unlike most existing tools, it is based on profile HMM-based homology search. It searches genomic sequences against protein domain database.Therefore, when protein annotations of the genome is not available, it still can accurately identify processed pseudogenes.

::DEVELOPER

Yuan Zhang

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • G++

:: DOWNLOAD

 PseudoDomain

:: MORE INFORMATION

Citation

Y. Zhang and Y. Sun,
PseudoDomain: identification of processed pseudogenes based on protein domain classification,
ACM Conference on Bioinformatics, Computational Biology and Biomedicine (ACM BCB), 2012. Pages 178-185

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