PSAR / PSAR-Align
PSAR (probabilistic sampling-based alignment reliability) is a software to the alignments in the UCSC Genome Browser to measure the reliability of alignments in different types of regions, such as coding exons and conserved non-coding regions, and use it to guide cross-species conservation study.
PSAR-Align is a software of improving multiple sequence alignment using probabilistic sampling
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Bioinformatics. 2014 Apr 1;30(7):1010-2. doi: 10.1093/bioinformatics/btt636. Epub 2013 Nov 12.
PSAR-align: improving multiple sequence alignment using probabilistic sampling.
Kim J1, Ma J.
Nucleic Acids Res. 2011 Aug;39(15):6359-68. Epub 2011 May 16.
PSAR: measuring multiple sequence alignment reliability by probabilistic sampling.
Kim J, Ma J.