PROTMAP2D is a tool for calculation, visualization and comparison of contact maps. It can be used for quantitative and qualitative characterization of differences and similarities between alternative models of the same protein, e.g. members of the ensemble calculated from the results of the nuclear magnetic resonance (NMR) analysis, crystal structures solved under different conditions, theoretical models calculated with different programs, or series of conformations obtained in the course of molecular dynamics (MD) simulations. PROTMAP2D allows analyzing multimeric proteins, and can be used to visualize intermolecular contacts in protein-protein complexes.
- Linux / Windows/ MacOsX
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Michal J. Pietal, Irina Tuszynska and Janusz M. Bujnicki
PROTMAP2D: visualization, comparison and analysis of 2D maps of protein structure
Bioinformatics (2007) 23 (11): 1429-1430.