ProSAT toolkit is a set of programs that allow building SVM based models for annotating amino acid residues in protein sequences using user supplied features (like PSI-BLAST profiles, or PSIPred profiles). In particular, the toolkit builds features using a window around the residue, and is equipped with a specialized kernel function (normalized second order exponential kernel function nsoe ) along with the standard svm kernel function.
Professsor Huzefa Rangwala (email@example.com) and Professsor George Karypis
- Windows/ Linux
:: MORE INFORMATION
“A kernel framework for protein residue annotation“.
Huzefa Rangwala, Christopher Kauffman and George Karypis.
Lecture Notes in Computer Science Volume 5476, 2009, pp 439-451