Jan 132016
 

ProQ2 / ProQM

:: DESCRIPTION

ProQ2 (Protein Quality Predictor) is a neural network based predictor that based on a number of structural features predicts the quality of a protein model. ProQ is optimized to find correct models in contrast to other methods which are optimized to find native structures.

ProQM method uses a support vector machine with a combination of general and membrane protein-specific features.

::DEVELOPER

IFM Bioinformatics

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • Perl

:: DOWNLOAD

 ProQ2 / ProQM

:: MORE INFORMATION

Citation:

ProQ2: Estimation of Model Accuracy Implemented in Rosetta.
Uziela K, Wallner B.
Bioinformatics. 2016 Jan 5. pii: btv767.

Improved model quality assessment using ProQ2.
Arjun Ray, Erik Lindahl and B. Wallner.
BMC Bioinformatics 2012, 13:224, doi:10.1186/1471-2105-13-224

Bioinformatics. 2010 Dec 15;26(24):3067-74. doi: 10.1093/bioinformatics/btq581. Epub 2010 Oct 14.
Model quality assessment for membrane proteins.
Ray A, Lindahl E, Wallner B.

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