Oct 182015
 

PPfold 3.1.1

:: DESCRIPTION

PPfold predict the consensus secondary structure of RNA alignments through a stochastic context-free grammar coupled to an evolutionary model.PPfold is a new version of pfold

::DEVELOPER

Zsuzsanna Sukosd (zs@mb.au.dk)

:: SCREENSHOTS

:: REQUIREMENTS

  • Linux / Mac OsX /Windows
  • JAVA

:: DOWNLOAD

 PPfold

:: MORE INFORMATION

Citation:

PPfold 3.0: fast RNA secondary structure prediction using phylogeny and auxiliary data.
Sükösd Z, Knudsen B, Kjems J, Pedersen CN.
Bioinformatics. 2012 Oct 15;28(20):2691-2. doi: 10.1093/bioinformatics/bts488.

Z. Sukosd, B. Knudsen, M. Vaerum, J. Kjems, E.S.Andersen.
Multithreaded comparative RNA secondary structure prediction using stochastic context-free grammars
BMC Bioinformatics 12:103, 2011

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