PoSSuM / PoSSuMsearch 2.0 – Matching of PPSSMs using Enhanced Suffix Arrays

PoSSuM / PoSSuMsearch 2.0

:: DESCRIPTION

PoSSuM / PoSSuMsearch is a software which significant speedup of database searches with HMMs by search space reduction with PSSM (position specific scoring matrices) family model.

::DEVELOPER

JUNIOR RESEARCH GROUP FOR APPLICATION ORIENTED BIOINFORMATICS

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / SUN solaris

:: DOWNLOAD

PoSSuM / PoSSuMsearch

:: MORE INFORMATION

Citation

Michael Beckstette, Robert Homann, Robert Giegerich, and Stefan Kurtz
Significant speedup of database searches with HMMs by search space reduction with PSSM family models
Bioinformatics, 15 December 2009; 25: 3251 – 3258.

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