Jun 102014
 

poolne_estim 1.0

:: DESCRIPTION

poolne_estim is a program implementing a Markov Chain Monte Carlo algorithm to sample the posterior distribution of the different parameters underlying the Bayesian hierarchical model. It is primarily aimed at estimating in Pool-Seq experiment the effective diploid size of pools/replicates (e.g. identified by molecular barcodes) from SNP allele count data. Note that each pool (or replicate) are assumed to originate from the same population.

::DEVELOPER

Centre de Biologie et Gestion des Populations (CBGP)

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows /  Linux

:: DOWNLOAD

poolne_estim

:: MORE INFORMATION

Citation

Estimation of population allele frequencies from next-generation sequencing data: pool-versus individual-based genotyping.
Gautier M, Foucaud J, Gharbi K, Cézard T, Galan M, Loiseau A, Thomson M, Pudlo P, Kerdelhué C, Estoup A.
Mol Ecol. 2013 Jul;22(14):3766-79. doi: 10.1111/mec.12360.

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