May 172013
 

PocketMatch 2.0

:: DESCRIPTION

PocketMatch is a software for comparison of binding sites in a frame invariant manner. Each binding site is represented by 90 lists of sorted distances capturing shape and chemical nature of the site. The sorted arrays are then aligned using an incremental alignment method and scored to obtain PMScores for pairs of sites.

::DEVELOPER

Prof. Nagasuma Chandra’s group at Department of Biochemistry, Indian Institute of Science.

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

 PocketMatch

:: MORE INFORMATION

Citation

Kalidas Yeturu and Nagasuma Chandra(2008)
PocketMatch: A new algorithm to compare binding sites in protein structures
BMC Bioinformatics 2008, 9:543

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