plshghmm is an alternative approach to predicting nucleosome positioning from sequence, making use of characteristic sequence differences, and inherent dependencies in overlapping sequence features. It based on the idea of generalized hierarchical hidden Markov models (HGHMMs).
- Linux/ Windows/ MacOsX
- R package
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Stat Appl Genet Mol Biol. 2012 Jan 6;11(2). doi: 10.2202/1544-6115.1707.
A generalized hidden Markov model for determining sequence-based predictors of nucleosome positioning.
Moser C, Gupta M.