Aug 202013
 

piRNA 3.6 / biRNA 3.6

:: DESCRIPTION

piRNA is a parallel C++ package to compute joint and individual partition functions for two RNA sequences. From the partition functions, piRNA computes equilibrium concentrations of single and double joint species, ensemble energy, and melting temperatures.

biRNA is a fast open source tool based on a heuristic algorithm to compute RNA-RNA binding sites.

:DEVELOPER

Algorithmic Biology Laboratory

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

 piRNA

:: MORE INFORMATION

Citation

Hamidreza Chitsaz, Raheleh Salari, S. Cenk Sahinalp, Rolf Backofen
A Partition Function Algorithm for Interacting Nucleic Acid Strands
Bioinformatics (2009) 25 (12): i365-i373.

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