Sep 092015
 

PIntron 1.3.3

:: DESCRIPTION

PIntron is a novel pipeline for gene-structure prediction based on spliced alignment of transcript sequences (ESTs and mRNAs) against a genomic sequence.

::DEVELOPER

AlgoLab

:: SCREENSHOTS

N/A

::REQUIREMENTS

  • Linux
  • Python
  • Perl
  • gcc, make

:: DOWNLOAD

 PIntron

:: MORE INFORMATION

Citation

BMC Bioinformatics. 2012 Apr 12;13 Suppl 5:S2. doi: 10.1186/1471-2105-13-S5-S2.
PIntron: a fast method for detecting the gene structure due to alternative splicing via maximal pairings of a pattern and a text.
Pirola Y, Rizzi R, Picardi E, Pesole G, Della Vedova G, Bonizzoni P.

Methods Mol Biol. 2015;1269:173-88. doi: 10.1007/978-1-4939-2291-8_11.
Transcriptome assembly and alternative splicing analysis.
Bonizzoni P1, Della Vedova G, Pesole G, Picardi E, Pirola Y, Rizzi R.

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