PileLine 1.2 / PileLineGUI 1.3 – Handle Genome Position information in Next-generation Sequencing Studies

PileLine 1.2 / PileLineGUI 1.3


PileLine is a flexible command-line toolkit for efficient handling, filtering, and comparison of genomic position (GP) files produced by next-generation sequencing experiments (i.e. pileup, BED,GFF, or VCF files). PileLine is designed to be memory efficient by performing on-disk operations over sorted GP files directly.


PileLine GUI is a front-end of the PileLine toolkit, plus a genome browser.


SING Group.




 PileLine / PileLineGUI



PileLine: a toolbox to handle genome position information in next-generation sequencing studies.
Glez-Peña D, Gómez-López G, Reboiro-Jato M, Fdez-Riverola F, Pisano DG.
BMC Bioinformatics. 2011 Jan 24;12:31.

PileLineGUI: a desktop environment for handling genome position files in next-generation sequencing studies.
López-Fernández H, Glez-Peña D, Reboiro-Jato M, Gómez-López G, Pisano DG, Fdez-Riverola F.
Nucleic Acids Res. 2011 Jul;39(Web Server issue):W562-6. Epub 2011 Jun 6.



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