piCALL is a method designed to detect short insertion/deletion variants (and SNPs) from population sequence data, i.e. sequence reads generated from a population of individuals. piCALL uses a probabilistic model to utilize sequence reads from a population of individuals to automatically account for context-specific sequencing errors associated with indels.
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Bioinformatics. 2011 Aug 1;27(15):2047-53. doi: 10.1093/bioinformatics/btr344. Epub 2011 Jun 7.
A probabilistic method for the detection and genotyping of small indels from population-scale sequence data.
Bansal V, Libiger O.