FAPI is a powerful multi-thread Java-based application developed to infer p-values of untyped Single-nucleotide polymorphisms (SNPs) through p-values of SNPs in LD with the untyped one. With similar imputation accuracy to other genotype imputation tools (including IMPUTEand MACH), FAPI is superfast, without requiring phases of reference genotypes and any sample raw genotypes.
Miao-xin Li, Department of Biochemistry, The University of Hong Kong
- Windows / Linux / MacOSX
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Kwan JS, Li MX, Deng JE, Sham PC.
An ultra-fast and versatile p-value imputation for genome-wide association studies