Dec 052014
 

PhyloSNP

:: DESCRIPTION

PhyloSNP is designed to take SNP data files (.csv and .vcf) and generate phylogenetic trees from the provided data. Additionally, PhyloSNP can either generate a shortened concatenated genome from the SNPs or generate a concatenated genome from contigs generated from the SNPs and a specified number of base pairs around each SNP.

::DEVELOPER

High-performance Integrated Virtual Environment (HIVE)

:: SCREENSHOTS

PhyloSNP

:: REQUIREMENTS

  • Linux / Windows

:: DOWNLOAD

  PhyloSNP

:: MORE INFORMATION

Citation

Genomics. 2014 Jul;104(1):1-7. doi: 10.1016/j.ygeno.2014.06.001. Epub 2014 Jun 12.
Whole genome single-nucleotide variation profile-based phylogenetic tree building methods for analysis of viral, bacterial and human genomes.
Faison WJ, Rostovtsev A, Castro-Nallar E, Crandall KA, Chumakov K, Simonyan V, Mazumder R

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