PhyloBayes is a Bayesian Monte Carlo Markov Chain (MCMC) sampler for phylogenetic reconstruction using protein alignments. Compared to other phylogenetic MCMC samplers (e.g. MrBayes), the main distinguishing feature of PhyloBayes is the underlying probabilistic model, CAT. It is particularly well suited for large multigene alignments, such as those used in phylogenomics.
Nicolas Lartillot (firstname.lastname@example.org)
- Windows / Linux / Mac OsX
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Nicolas Lartillot, Thomas Lepage and Samuel Blanquart
PhyloBayes 3: a Bayesian software package for phylogenetic reconstruction and molecular dating
Bioinformatics (2009) 25 (17): 2286-2288.