phoMSVal is an open-source platform developed for managing MS/MS data and automatically validating identified phosphopeptides. phoMSVal imports data into a MySQL relational database, extracts features for classification, and assigns a classification label to each spectrum designating whether the given peptide assignment is likely to be correct. The classifier used is a random forest classifier with an input of ten features calculated from the spectra.
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Lahesmaa-Korpinen A.-M., Carlson S.M., White F.M., Hautaniemi S.,
Integrated data management and validation platform for phosphorylated tandem mass spectrometry data.
Proteomics, 10:3515-3524, 2010.