perEditor 20130614 – Create Personalized Genome Sequences

perEditor 20130614

:: DESCRIPTION

perEditor (Personal Genome Editor) changes the reference human genome (NCBI36/hg18) into an individual genome, taking into account single nucleotide polymorphisms (SNPs), insertions and deletions, copy number variation, and chromosomal rearrangements. perEditor outputs two alleles (maternal, paternal) of the individual genome that is ready for mapping ChIP-seq and RNA-seq reads, and enabling the analyses of allele specific binding, chromatin structure, and gene expression.

::DEVELOPER

Zhong Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

 perEditor

:: MORE INFORMATION

Citation

Bioinformatics. 2011 Dec 15;27(24):3427-9. Epub 2011 Oct 17.
Mapping personal functional data to personal genomes.
Rivas-Astroza M, Xie D, Cao X, Zhong S.

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