PeppeR 2.12 rc3
PeppeR is the Java-based, graphical graphical DAS client, intended for visualization of hybrid models (3D-EM volume maps plus atomic resolution structures from fitting experiments) together with their annotations .
This annotation system has been built on the basis of the EMDB, which stores Three-dimensional Electron Microscopy (3D-EM) volumes, PDB, which houses atomic coordinates, and UniProt (for protein sequences) databases. In this way, annotations for sequences, atomic coordinates, and 3D-EM volumes are collected and displayed through a single graphical visualization client. Thus, users have an integrated view of all the annotations together with the whole macromolecule (3D-EM map coming from EMDB), the atomic resolution structures fitted into it (coordinates coming from PDB) and the sequences corresponding to each of the structures (from UniProt).
The Biocomputing Unit (BCU)
- Linux / Windows / Mac OsX
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Integrating electron microscopy information into existing Distributed Annotation Systems.
J R Macías, N Jiménez-Lozano, J M Carazo (2007)
Journal of structural biology 158 (2) p. 205-13 PMID: 17400476; doi: 10.1016/j.jsb.2007.02.004