PeakFinder program was developed to find cohesin binding sites represented by the peaks in yeast chromatin immunoprecipitation (ChIP) microarray data, but can be applied to plot any measurement against a parameter such as genome coordinate, to interactively analyze the measurement plot, and to annotate the peaks on the basis of local properties of the curve.
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Glynn EF, Megee PC, Yu H-G, Mistrot C, Unal E, et al. (2004)
Genome-wide mapping of the cohesin complex in the yeast Saccharomyces cerevisiae.
PLoS Biol 2(9): e259. doi:10.1371/journal.pbio.0020259