PDZPepInt is a cluster based prediction tool to predict binding peptides of PDZ domains in human, mouse, fly and worm. Total 43 built-in models that cover 226 PDZ domains across the species are available. Peptides are represented as 5 C-terminal sequences of binding proteins. Depending on the user requirement Gene Ontology database can be used for getting reliable interactions. Additionally, it will also consider the C-terminal peptides that are intrinsically unstructured for getting high confidence interactions.
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BMC Genomics. 2014;15 Suppl 1:S5. doi: 10.1186/1471-2164-15-S1-S5. Epub 2014 Jan 24.
Cluster based prediction of PDZ-peptide interactions.
Kundu K, Backofen R.