PCAj (Principal component analysis for Japanese)predicts population structure of Japanese samples using genome-wide SNP genotypes. It creates a 2D scatterplot of predicted principal components based on the probabilistic PCA.
- Linux / MacOsX / Windows
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Kumasaka et al. (2010)
Establishment of a Standardized System to Perform Population Structure Analyses with Limited Sample Size or with Different Sets of SNP Genotypes.
Journal of Human Genetics, 55(8):525-33.