PBJelly – the genome upgrading tool.
PBHoney – the structural variation discovery tool
PBJelly is a highly automated pipeline that aligns long sequencing reads (such as PacBio RS reads or long 454 reads in fasta format) to high-confidence draft assembles.
PBHoney is an implementation of two variant-identification approaches designed to exploit the high mappability of long reads (i.e., greater than 10,000 bp).
Adam English e-mail English@bcm.edu
:: MORE INFORMATION
BMC Bioinformatics. 2014 Jun 10;15:180. doi: 10.1186/1471-2105-15-180.
PBHoney: identifying genomic variants via long-read discordance and interrupted mapping.
English AC1, Salerno WJ, Reid JG.
English AC, Richards S, Han Y, Wang M, Vee V, et al. (2012)
Mind the Gap: Upgrading Genomes with Pacific Biosciences RS Long-Read Sequencing Technology.
PLoS ONE 7(11): e47768. doi:10.1371/journal.pone.0047768