Sep 222015
 

PBSuite 150824

:: DESCRIPTION

PBSuite includes:
PBJelly – the genome upgrading tool.
PBHoney – the structural variation discovery tool

PBJelly is a highly automated pipeline that aligns long sequencing reads (such as PacBio RS reads or long 454 reads in fasta format) to high-confidence draft assembles.

PBHoney is an implementation of two variant-identification approaches designed to exploit the high mappability of long reads (i.e., greater than 10,000 bp).

::DEVELOPER

Adam English e-mail English@bcm.edu

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • Python

:: DOWNLOAD

 PBSuite

:: MORE INFORMATION

Citation:

BMC Bioinformatics. 2014 Jun 10;15:180. doi: 10.1186/1471-2105-15-180.
PBHoney: identifying genomic variants via long-read discordance and interrupted mapping.
English AC1, Salerno WJ, Reid JG.

English AC, Richards S, Han Y, Wang M, Vee V, et al. (2012)
Mind the Gap: Upgrading Genomes with Pacific Biosciences RS Long-Read Sequencing Technology.
PLoS ONE 7(11): e47768. doi:10.1371/journal.pone.0047768

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