Oct 212013
 

PatternUnmixer 2.0

:: DESCRIPTION

PatternUnmixer (formerly called PUnmix) learns a model of fundamental subcellular patterns using user-specified images of “pure” subcellular patterns (e.g., lysosomes, endosomes) and then uses that model to calculate the fraction of probe in each subcellular compartment for images containing mixed patterns.

::DEVELOPER

Murphy Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows/Linux/MacOsX
  • Matlab

:: DOWNLOAD

 PatternUnmixer

:: MORE INFORMATION

Citation

IEEE Trans Image Process. 2005 Sep;14(9):1351-9.
Object type recognition for automated analysis of protein subcellular location.
Zhao T, Velliste M, Boland MV, Murphy RF.

T. Peng, G.M.C. Bonamy, E. Glory, D. Rines, S. K. Chanda, and R. F. Murphy (2010)
Automated Unmixing Of Subcellular Patterns: Determining the Distribution of Probes Between Different Subcellular Locations.
Proc. Natl. Acad. Sci. U.S.A. 107:2944-2949

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