Patman searches for short patterns in large DNA databases, allowing for approximate matches. It is optimized for searching for many small pattern at the same time, for example microarray probes.
Department of Genetics/Bioinformatics – Max Planck Institut
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Kay Prüfer et al.
PatMaN: rapid alignment of short sequences to large databases.
Bioinformatics. 2008 Jul 1;24(13):1530-1