Aug 082016
 

partiFold / partiFold-Align

:: DESCRIPTION

partiFold is a software to investigate the folding landscape of TMBs (Transmembrane Beta-barrel Proteins).

partiFold-Align is the first algorithm for simultaneous alignment and consensus folding of unaligned protein sequences; the algorithm’s complexity is polynomial in time and space.

::DEVELOPER

Jerome Waldispühl , Bonnie Berger

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux /  Mac OsX
  • WebServer

:: DOWNLOAD

 partiFold

:: MORE INFORMATION

Citation:

Simultaneous alignment and folding of protein sequences.
Waldispühl J, O’Donnell CW, Will S, Devadas S, Backofen R, Berger B.
J Comput Biol. 2014 Jul;21(7):477-91. doi: 10.1089/cmb.2013.0163

J. Waldispühl, C.W. O’Donnell, S. Devadas, P. Clote and B. Berger.
Modeling Ensembles of Transmembrane β-barrel Proteins
PROTEINS: Structure, Function and Bioinformatics, published online 14 Nov. 2007. doi:10.1002/prot.21788

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