ParTIES was designed for Paramecium species, that (i) identifies eliminated sequences, (ii) measures their presence in a sequencing sample and (iii) detects rare elimination polymorphisms.
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ParTIES : a toolbox for Paramecium interspersed DNA elimination studies.
Denby Wilkes C, Arnaiz O, Sperling L.
Bioinformatics. 2015 Nov 20. pii: btv691.