Sep 012012
 

Parallel T-Coffee 1.914

:: DESCRIPTION

Parallel T-Coffee (PTC) is the first parallel implementation of the TCoffee multiple sequence alignment tool. It has been developed to overcome main limitations of the original method. It is based on the MPI and RMA mechanisms, and it can be run on distributed memory clusters. PTC supports a majority of options provided by TCoffee 3.79, including the 3D-Coffee mode. It can be used to align data sets consisting of hundreds of proteins in reasonable time limits.

::DEVELOPER

Aluru HPC Group

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • C++ compiler
  • Perl

:: DOWNLOAD

 Parallel T-Coffee

:: MORE INFORMATION

Citation

J. Zola, X. Yang, S. Rospondek, S. Aluru
Parallel T-Coffee: A Parallel Multiple Sequence Aligner
In Proc. of ISCA PDCS-2007, pp. 248-253, 2007.

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