PARALIGN is a sequence database search application based on local sequence alignments. It incorporates the most sensitive algorithms for searching sequence databases based on local sequence alignments. Implementation of these algorithms at a very high speed has been achieved by exploiting the advanced parallel processing technology embedded in modern microprocessors.
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Sæbø PE, Andersen SM, Myrseth J, Laerdahl JK, Rognes T (2005)
PARALIGN: rapid and sensitive sequence similarity searches powered by parallel computing technology.
Nucleic Acids Research, 33 (Suppl 2), W535-W538.