Sep 282014
 

PAR-CLIP HMM 0.1.0

:: DESCRIPTION

PAR-CLIP HMM (rcpphmmparclip) provides an integrative model to establish a joint distribution of read and mutation counts. To pinpoint the interaction sites at single base-pair resolution, we adopts non-homogeneous hidden Markov models that incorporate the nucleotide sequence.

::DEVELOPER

The Quantitative Biomedical Research Center 

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux /  Windows / MacOsX
  • R

:: DOWNLOAD

 PAR-CLIP HMM

:: MORE INFORMATION

Citation

Biometrics. 2014 Jun;70(2):430-40. doi: 10.1111/biom.12147. Epub 2014 Feb 24.
Bayesian hidden Markov models to identify RNA-protein interaction sites in PAR-CLIP.
Yun J1, Wang T, Xiao G.

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