PanGP is a tool for quickly analyzing bacterial pan-genome profile. It has integrated two kinds of sample algorithm, so that it could calculate the pan-genome profile of a population with dozens of or hundreds of strains at extremely low time-cost. At the same time, a user-friendly graphical interface was designed and the image about pan-genome profile could be drawn by PanGP directly.
Beijing Institute of Genomics, Chinese Acadamy of Sciences
- Linux/ Windows
- C++ compiler
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Bioinformatics. 2014 May 1;30(9):1297-9. doi: 10.1093/bioinformatics/btu017. Epub 2014 Jan 13.
PanGP: a tool for quickly analyzing bacterial pan-genome profile.
Zhao Y1, Jia X, Yang J, Ling Y, Zhang Z, Yu J, Wu J, Xiao J.