Jul 142016
 

PANDA v2 / PyPanda / PandaR 1.4.2

:: DESCRIPTION

PANDA is a message-passing model using multiple sources of information to predict regulatory relationships, and used it to integrate protein-protein interaction, gene expression, and sequence motif data to reconstruct genome-wide, condition-specific regulatory networks in yeast.

PandaR is an alternate implementation of PANDA in R

PyPanda is a python implementation of PANDA

::DEVELOPER

The Glass Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows / Linux /MacOsX
  • Python / C Compiler / R

:: DOWNLOAD

 PANDA / PyPanda / PandaR

:: MORE INFORMATION

Citation:

PLoS One. 2013 May 31;8(5):e64832. doi: 10.1371/journal.pone.0064832. Print 2013.
Passing messages between biological networks to refine predicted interactions.
Glass K1, Huttenhower C, Quackenbush J, Yuan GC.

PyPanda: a Python package for gene regulatory network reconstruction.
van IJzendoorn DG, Glass K, Quackenbush J, Kuijjer ML.
Bioinformatics. 2016 Jul 10. pii: btw422.

10 views

Sorry, the comment form is closed at this time.