MirCompare – Algorithm to Compare Plant and Mammalian miRNAs

 RNA Analysis 34 views Comments Off on MirCompare – Algorithm to Compare Plant and Mammalian miRNAs
Aug 082016
 
MirCompare - Algorithm to Compare Plant and Mammalian miRNAs

MirCompare :: DESCRIPTION MirCompare is an innovative algorithm developed to compare sets of microRNAs belonging to different kingdoms, for their capacity to bind host mRNAs. ::DEVELOPER MirCompare team :: SCREENSHOTS N/A :: REQUIREMENTS Web browser :: DOWNLOAD   NO :: MORE INFORMATION Citation: Bioinformatics Prediction and Experimental Validation of MicroRNAs Involved in Cross-Kingdom Interaction. Pirrò […]

qnr 0.8067 – Discover Fluoroquinolone Antibiotic Resistance (qnr) Genes in Fragmented Nucleotide Sequences

 DNA / Genome Analysis 12 views Comments Off on qnr 0.8067 – Discover Fluoroquinolone Antibiotic Resistance (qnr) Genes in Fragmented Nucleotide Sequences
Aug 082016
 
qnr 0.8067 - Discover Fluoroquinolone Antibiotic Resistance (qnr) Genes in Fragmented Nucleotide Sequences

qnr 0.8067 :: DESCRIPTION qnr is a Python implementation of a method for searching large metagenomic dataset to identify qnr fluoroquinolone antibiotic resistance genes. ::DEVELOPER qnr team :: SCREENSHOTS N/A :: REQUIREMENTS Linux Python :: DOWNLOAD  qnr :: MORE INFORMATION Citation: A novel method to discover fluoroquinolone antibiotic resistance (qnr) genes in fragmented nucleotide sequences. Boulund […]

HattCI 200160218 – Identification of attC sites in large DNA data sets

 DNA / Genome Analysis 18 views Comments Off on HattCI 200160218 – Identification of attC sites in large DNA data sets
Aug 082016
 
HattCI 200160218 - Identification of attC sites in large DNA data sets

HattCI 200160218 :: DESCRIPTION HattCI is a C-program for the identification of attC sites in any type of DNA data. It uses a hidden Markov model (HMM) to describe each part of the attC site in a probabilistic manner. ::DEVELOPER HattCI team :: SCREENSHOTS N/A :: REQUIREMENTS Linux :: DOWNLOAD   HattCI :: MORE INFORMATION Citation: HattCI: […]

NIAS-Server 1.0 – Neighbors Influence of Amino acids and Secondary Structures in Proteins

 Protein Sequence Analysis 50 views Comments Off on NIAS-Server 1.0 – Neighbors Influence of Amino acids and Secondary Structures in Proteins
Aug 082016
 
NIAS-Server 1.0 - Neighbors Influence of Amino acids and Secondary Structures in Proteins

NIAS-Server 1.0 :: DESCRIPTION NIAS is a server to help the analysis of the conformational preferences of amino acid residues in proteins. ::DEVELOPER SBCB – Structural Bioinformatics and Computational Biology Lab :: SCREENSHOTS N/A :: REQUIREMENTS Web browser :: DOWNLOAD  NO :: MORE INFORMATION Citation: NIAS-Server: Neighbors Influence of Amino acids and Secondary Structures in […]

QuasR 1.12.0 – Quantify and Annotate Short Reads in R

 DNA / Genome Analysis 37 views Comments Off on QuasR 1.12.0 – Quantify and Annotate Short Reads in R
Aug 082016
 
QuasR 1.12.0 - Quantify and Annotate Short Reads in R

QuasR 1.12.0 :: DESCRIPTION QuasR is a package for the integrated analysis of high-throughput sequencing data in R, covering all steps from read preprocessing, alignment and quality control to quantification. ::DEVELOPER Anita Lerch, Dimos Gaiditzis and Michael Stadler <michael.stadler at fmi.ch> :: SCREENSHOTS N/A :: REQUIREMENTS Windows / Linux / MacOsX R BioConductor :: DOWNLOAD  QuasR […]

methylKit 0.99.2 – R package for DNA methylation analysis

 DNA / Genome Analysis 943 views Comments Off on methylKit 0.99.2 – R package for DNA methylation analysis
Aug 082016
 
methylKit 0.99.2 - R package for DNA methylation analysis

methylKit 0.99.2 :: DESCRIPTION methylKit is an R package for DNA methylation analysis and annotation from high-throughput bisulfite sequencing. The package is designed to deal with sequencing data from RRBS and its variants, but also target-capture methods such as Agilent SureSelect methyl-seq. It can potentially handle whole-genome bisulfite sequencing data if proper input format is […]

IGV 2.3.80 / for iPad 1.1 – Integrative Genomics Viewer

 DNA / Genome Analysis 1,745 views Comments Off on IGV 2.3.80 / for iPad 1.1 – Integrative Genomics Viewer
Aug 082016
 
IGV 2.3.80 / for iPad 1.1 - Integrative Genomics Viewer

IGV 2.3.80 / for iPad 1.1 :: DESCRIPTION IGV (Integrative Genomics Viewer) is a high-performance visualization tool for interactive exploration of large, integrated datasets. It supports a wide variety of data types including sequence alignments, microarrays, and genomic annotations. IGV for iPad is a lightweight genomic data viewer that provides some of the functionality available […]

ReadXplorer 2.2.3 – Visualization and Analysis of Mapped Sequences

 DNA / Genome Analysis 191 views Comments Off on ReadXplorer 2.2.3 – Visualization and Analysis of Mapped Sequences
Aug 082016
 
ReadXplorer 2.2.3 - Visualization and Analysis of Mapped Sequences

ReadXplorer 2.2.3 :: DESCRIPTION ReadXplorer is a freely available comprehensive exploration and evaluation tool for NGS data. It extracts and adds quantity and quality measures to each alignment in order to classify the mapped reads. This classification is then taken into account for the different data views and all supported automatic analysis functions. ::DEVELOPER Bioinformatics and […]

pyDNase 0.2.4 – a Library for Analyzing DNase-seq data

 DNA / Genome Analysis 59 views Comments Off on pyDNase 0.2.4 – a Library for Analyzing DNase-seq data
Aug 082016
 
pyDNase 0.2.4 - a Library for Analyzing DNase-seq data

pyDNase 0.2.4 :: DESCRIPTION Wellington is a novel method for the accurate identification of digital genomic footprints from DNase-seq data. pyDNase is an open-source software package which implements the Wellington algorithm to interface with DNase-seq data and expedite analyses. ::DEVELOPER Dr Sascha Ott :: SCREENSHOTS N/A :: REQUIREMENTS Linux/MacOsX Python :: DOWNLOAD  pyDNase :: MORE […]

Chromas 2.6 / ChromasPro 2.0.1 – Sequence & Chromatogram Editor

 DNA / Genome Analysis 12,380 views Comments Off on Chromas 2.6 / ChromasPro 2.0.1 – Sequence & Chromatogram Editor
Aug 082016
 
Chromas 2.6 / ChromasPro 2.0.1 - Sequence & Chromatogram Editor

Chromas 2.6 / ChromasPro 2.0.1 :: DESCRIPTION Chromas is a low-cost chromatogram file editor with search, vector sequence detection and multi-format sequence export functions, plus powerful batch processing. ChromasPro is a low-cost sequence and chromatogram editor with search, vector sequence detection, contiguous sequence assembly and restriction and open-reading-frame mapping. ::DEVELOPER Technelysium Pty Ltd :: SCREENSHOTS […]