BioPerl 1.7.2 – Perl Code in Biology

 Bioinformatics Platform 1,072 views Comments Off on BioPerl 1.7.2 – Perl Code in Biology
Nov 222018
 
BioPerl 1.7.2 - Perl Code in Biology

BioPerl 1.7.2 :: DESCRIPTION Bioperl is a collection of Perl modules that facilitate the development of Perl scripts for bioinformatics applications. As such, it does not include ready to use programs in the sense that many commercial packages and free web-based interfaces do (e.g. Entrez, SRS). On the other hand, Bioperl does provide reusable Perl […]

JABAWS 2.2 – JAva Bioinformatics Analysis Web Services

 Bioinformatics Platform 206 views Comments Off on JABAWS 2.2 – JAva Bioinformatics Analysis Web Services
Nov 222018
 
JABAWS 2.2 - JAva Bioinformatics Analysis Web Services

JABAWS 2.2 :: DESCRIPTION JABAWS is a collection of web services for bioinformatics, and currently provides services that make it easy to access well-known multiple sequence alignment and protein disorder prediction programs from Jalview. JABAWS is free software which provides web services conveniently packaged to run on your local computer, server, cluster or Amazon EC2 […]

EMBOSS 6.6.0 / Jemboss 1.5 – Suite of Bioinformatics Tools

 Bioinformatics Platform 3,810 views Comments Off on EMBOSS 6.6.0 / Jemboss 1.5 – Suite of Bioinformatics Tools
Nov 222018
 
EMBOSS 6.6.0 / Jemboss 1.5 - Suite of Bioinformatics Tools

EMBOSS 6.6.0 / Jemboss 1.5 :: DESCRIPTION EMBOSS (European Molecular Biology Open Software Suite) is a free Open Source software analysis package specially developed for the needs of the molecular biology (e.g. EMBnet) user community. The software automatically copes with data in a variety of formats and even allows transparent retrieval of sequence data from […]

NCBI C++ Toolkit 21.0 – Collection of C++ Modules for Bioinformatics

 Bioinformatics Platform 822 views Comments Off on NCBI C++ Toolkit 21.0 – Collection of C++ Modules for Bioinformatics
Nov 222018
 
NCBI C++ Toolkit 21.0 - Collection of C++ Modules for Bioinformatics

NCBI C++ Toolkit 21.0 :: DESCRIPTION NCBI C++ Toolkit is a collection of C++ modules developed by the NCBI for writing bioinformatics software and applications. NCBI C++ Toolkit was developed for the production and distribution of GenBank, Entrez, BLAST, and related services by NCBI. ::DEVELOPER NCBI :: SCREENSHOTS N/A :: REQUIREMENTS Linux / Windows / Mac […]

Chinook 1.2.2 – Peer-to-peer (P2P) Bioinformatics Service

 Bioinformatics Platform 433 views Comments Off on Chinook 1.2.2 – Peer-to-peer (P2P) Bioinformatics Service
Nov 222018
 
Chinook 1.2.2 - Peer-to-peer (P2P) Bioinformatics Service

Chinook 1.2.2 :: DESCRIPTION Chinook is a peer-to-peer (P2P) bioinformatics service. The goal of the Chinook platform is to facilitate exchange of analysis techniques within a local community and/or worldwide. Chinook operates by turning command-line applications into services which are broadcast over a virtual network. Currently, there are over 10 analysis services that have been […]

Bioclipse 2.6.2 – Life Sciences Workbench

 3D molecular model, Bioinformatics Platform 1,304 views Comments Off on Bioclipse 2.6.2 – Life Sciences Workbench
Nov 222018
 
Bioclipse 2.6.2 - Life Sciences Workbench

Bioclipse 2.6.2 :: DESCRIPTION Bioclipse is a free and open source workbench for the life sciences with a state-of-the-art plugin architecture, enabling powerful integration of existing software, and making it easy to customize for different needs. Bioclipse has advanced functionality in fields such as cheminformatics, bioinformatics, semantic web, spectrum analysis, drug discovery, safety assessment and […]

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SQANTI 1.2 – Structural and Quality Annotation of Novel Transcript Isoforms

 Miscellaneous 80 views Comments Off on SQANTI 1.2 – Structural and Quality Annotation of Novel Transcript Isoforms
Nov 212018
 
SQANTI 1.2 - Structural and Quality Annotation of Novel Transcript Isoforms

SQANTI 1.2 :: DESCRIPTION SQANTI is a pipeline for the in-depth characterization of isoforms obtained by full-length transcript sequencing, which are commonly returned in a fasta file format without any extra information about gene/transcript annotation or attribute description. SQANTI provides a wide range of descriptors of transcript quality and generates a graphical report to aid […]

tappAS 0.99.09 – Understand the Functional Implications of Alternative Splicing

 Miscellaneous 37 views Comments Off on tappAS 0.99.09 – Understand the Functional Implications of Alternative Splicing
Nov 212018
 
tappAS 0.99.09 - Understand the Functional Implications of Alternative Splicing

tappAS 0.99.09 :: DESCRIPTION tappAS is a Java GUI application for the analysis of RNA-Seq data down to the isoform level.It provides a comprehensive set of data analysis, visualization, filtering, and hoc query tools.It will run on most modern computers, provided they have enough computational resources and storage. ::DEVELOPER The Genomics of Gene Expression Lab […]

CREAM 1.1.1 – Clustering of Genomic Regions Analysis Method

 Cluster Analysis 40 views Comments Off on CREAM 1.1.1 – Clustering of Genomic Regions Analysis Method
Nov 212018
 
CREAM 1.1.1 – Clustering of Genomic Regions Analysis Method

CREAM 1.1.1 :: DESCRIPTION CREAM (Clustering of Genomic Regions Analysis Method) provides a new method for identification of clusters of genomic regions within chromosomes. Primarily, it is used for calling clusters of cis-regulatory elements (COREs). ‘CREAM’ uses genome-wide maps of genomic regions in the tissue or cell type of interest, such as those generated from […]

QualiMap 2.2.1 – Evaluating Next Generation Sequencing Alignment data

 DNA / Genome Analysis 405 views Comments Off on QualiMap 2.2.1 – Evaluating Next Generation Sequencing Alignment data
Nov 212018
 
QualiMap 2.2.1 - Evaluating Next Generation Sequencing Alignment data

QualiMap 2.2.1 :: DESCRIPTION Qualimap is a platform-independent application written in Java and R that provides both a Graphical User Inteface (GUI) and a command-line interface to facilitate the quality control of alignment sequencing data. ::DEVELOPER QualiMap Team :: SCREENSHOTS :: REQUIREMENTS Linux / Windows/ MacOsX Java R package :: DOWNLOAD  Qualimap :: MORE INFORMATION […]