Jun 242011
 

OSLay 1.0

:: DESCRIPTION

OSLay (Optimal Syntenic Layouter) uses synteny between matching sequences in a target assembly and a reference assembly to layout the contigs (or scaffolds) in the target assembly. The tool provides an interactive visualization of the computed layout and the result can be imported into the assembly editing tool Consed to support the design of primer pairs for gap-closure.

::DEVELOPER

Daniel Huson’s Lab

:: SCREENSHOTS

:: REQUIREMENTS

  • Windows / MacOsX / Linux
  • Java

:: DOWNLOAD

OSLay

:: MORE INFORMATION

Citation:

D.C. Richter, S.C. Schuster, D.H. Huson.
OSLay: optimal syntenic layout of unfinished assemblies,
Bioinformatics. 2007 Jul 1;23(13):1573-9.

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