Ori-Finder is an online system for finding oriCs in bacterial genomes based on an integrated method comprising the analysis of base composition asymmetry using the Z-curve method, distribution of DnaA boxes, and the occurrence of genes frequently close to oriCs. The program can also deal with the unannotated sequences by integrating the gene-finding program ZCURVE 1.02. Output of the predicted results is exported to an HTML report, which offers convenient views on the results in both graphical and tabular formats.
TUBIC – the Tianjin University BioInformatics Centre.
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Ori-Finder 2, an integrated tool to predict replication origins in the archaeal genomes.
Luo H, Zhang CT, Gao F.
Front Microbiol. 2014 Sep 15;5:482. doi: 10.3389/fmicb.2014.00482.
Feng Gao and Chun-Ting Zhang (2008)
Ori-Finder: a web-based system for finding oriCs in unannotated bacterial genomes.
BMC Bioinformatics. 9:79.