OpenAlea is an open source project primarily aimed at the plant research community.It is a distributed collaborative effort to develop Python libraries and tools which address the needs of current and future work in Plant Architecture modeling. OpenAlea includes modules to represent, analyse, and model the functioning and growth of plant architecture.
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Ann Bot. 2014 Sep;114(4):795-812.
A modelling framework to simulate foliar fungal epidemics using functional-structural plant models.
Garin G, Fournier C, Andrieu B, Houlès V, Robert C, Pradal C.