OncoRep is a fully automated RNA-Seq based report for patients with (breast) cancer, which includes molecular classification, detection of altered genes, detection of altered pathways, identification of gene fusion events, identification of clinical actionable mutations (in coding regions) and identification of treatable target structures.
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OncoRep: an n-of-1 reporting tool to support genome-guided treatment for breast cancer patients using RNA-sequencing.
Meißner T, Fisch KM, Gioia L, Su AI.
BMC Med Genomics. 2015 May 21;8:24. doi: 10.1186/s12920-015-0095-z.