Jan 262015
 

OMIGA 1.0

:: DESCRIPTION

OMIGA is a pipeline for predicting protein-coding genes from insect genomes

::DEVELOPER

Li Lab: Insect Genomic and Bioinformatics

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • Perl
  • mysql(version 5.1 or later versions)
    – abyss(version 1.3.5 or later versions)
    – cegma(version 2.4.0 or later versions)
    – RepeatModeler(version 1.0.5 or later versions)
    – RepeatMasker(version 3.3.0 or later versions)
    – tophat(version 2.0.6 or later versions)
    – Cufflinks(version 2.0.2 or later versions)
    – Augustus(version 2.6.1 or later versions)
    – SNAP(version 2006-07-28 or later versions)
    – GeneMark-es(version 2.3 or later versions)
    – Maker(version 2.26 or later versions)
    – Interproscan(version 4.8 or later versions)

:: DOWNLOAD

 OMIGA

:: MORE INFORMATION

Citation

Mol Genet Genomics. 2014 Aug;289(4):567-73. doi: 10.1007/s00438-014-0831-7. Epub 2014 Mar 9.
OMIGA: Optimized Maker-Based Insect Genome Annotation.
Liu J1, Xiao H, Huang S, Li F.

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