Sep 182012
 

Oligomap 1.01

:: DESCRIPTION

Oligomap is a program for fast identification of nearly-perfect matches of small RNAs in sequence databases. It allows to exhaustively identify all the perfect and 1-error (where an error is defined to be a mismatch, insertion or deletion) matches of large sets of small RNAs to target sequences. Optimal performance is achieved at about 500000 query sequences

::DEVELOPER

Zavolan Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

 Oligomap

:: MORE INFORMATION

Citation

Berninger P, Gaidatzis D, van Nimwegen E, Zavolan M.
Computational analysis of small RNA cloning data“,
Methods, 44(13-21), 2008

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