NGS-MC is an R package which calculates the statistics and estimators in a Markov sequence model including the effective coverage, a chi-square statistic for k-words, normal approximation for every k-word, and five estimators for the order of Markov chain from NGS short read data.
- Linux / MacOsX / Windows
:: MORE INFORMATION
Jie Ren, Kai Song, Minghua Deng, Gesine Reinert, Charles H. Cannon, Fengzhu Sun (2015),
Inference of Markovian Properties of Molecular Sequences from NGS Data and Applications to Comparative Genomics.
Bioinformatics. 2015 Jun 30. pii: btv395.