NFsim (Network Free Stochastic Simuloator) is a free, open-source, biochemical reaction simulator designed to handle systems that have a large or even infinite number of possible molecular interactions or states. NFsim also has advanced and flexible options for simulating coarse-grained representations of complex nonlinear reaction mechanisms.
NFsim is ideal for modeling polymerization, aggregation, and cooperative reactions that cannot be handled with traditional stochastic or ODE simulators. Models are specified in the BioNetGen Langauge, providing a powerful model building environment.
- Windows / Linux / Mac OsX
:: MORE INFORMATION
Efficient modeling, simulation and coarse-graining of biological complexity with NFsim.
Sneddon MW, Faeder JR, Emonet T.
Nat Methods. 2011 Feb;8(2):177-83. doi: 10.1038/nmeth.1546.