NetMHCII predicts binding of peptides to HLA-DR, HLA-DQ, HLA-DP and mouse MHC class II alleles using articial neuron networks.
Predictions can be obtained for 14 HLA-DR alleles covering the 9 HLA-DR supertypes, six HLA-DQ, six HLA-DP, and two mouse H2 class II alleles.
The prediction values are given in nM IC50 values, and as a %-Rank to a set of 1,000,000 random natural peptides. Strong and weak binding peptides are indicated in the output.
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BMC Bioinformatics. 2009 Sep 18;10:296.
NN-align. An artificial neural network-based alignment algorithm for MHC class II peptide binding prediction.
Nielsen M, Lund O.