NetGestalt / NetSAM 1.26.0
NetGestalt is a data integration framework that allows simultaneous presentation of large-scale experimental and annotation data from various sources in the context of a biological network to facilitate data visualization, analysis, interpretation, and hypothesis generation.
NetSAM (Network Seriation and Modularization) is an R package that takes an edge-list representation of a network as an input and generates files that can be used as an input for the one-dimensional network visualization tool NetGestalt or other network analysis.
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Nat Methods. 2013 Jul;10(7):597-8. doi: 10.1038/nmeth.2517.
NetGestalt: integrating multidimensional omics data over biological networks.
Shi Z, Wang J, Zhang B.