NAOMI is a command-line tool for the consistent conversion of common chemical file formats (SDF, SMILES, MOL2). It is based on a robust chemical model which is designed to appropriately describe organic molecules relevant in the context of drug discovery. NAOMI also checks the chemical validity of molecules and calculates hydrogen coordinates.
Research Group for Computational Molecular Design ,Center for Bioinformatics, University of Hamburg
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S. Urbaczek, A. Kolodzik, J. R. Fischer, T. Lippert, S. Heuser, I. Groth, T. Schulz-Gasch, and M. Rarey,
NAOMI – On the almost trivial task of reading molecules from different file formats,
J. Chem. Inf. Model., 2011