MZmine is an open-source project delivering a software for mass-spectrometry data processing, with the main focus on LC-MS data. It is based on the original MZmine toolbox described in 2006 Bioinformatics publication, but has been completely redesigned and rewritten since then. Our main goal is to provide a user-friendly, flexible and easily extendable framework with a complete set of modules covering the entire LC-MS data analysis workflow.
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T. Pluskal, S. Castillo, A. Villar-Briones,M. Orešič,
MZmine 2: Modular framework for processing, visualizing, and analyzing mass spectrometry-based molecular profile data,
BMC Bioinformatics 11:395 (2010).