Mar 212016
 

mutationSeq 4.3.6

:: DESCRIPTION

mutationSeq is a software suite using feature-based classifiers for somatic mutation prediction from paired tumour/normal next-generation sequencing data. mutationSeq has the advantages of integrating different features (e.g., base qualities, mapping qualities, strand bias, and tailed distance features), and validated somatic mutations to make predictions. Given paired normal/tumour bam files, mutationSeq will output the probability of each candidate site being somatic.

::DEVELOPER

Shah Lab for Computational Cancer Biology

:: SCREENSHOTS

N/A

:: REQUIREMENTS

:: DOWNLOAD

 mutationSeq

:: MORE INFORMATION

Citation

Bioinformatics. 2012 Jan 15;28(2):167-75. doi: 10.1093/bioinformatics/btr629.
Feature-based classifiers for somatic mutation detection in tumour-normal paired sequencing data.
Ding J, Bashashati A, Roth A, Oloumi A, Tse K, Zeng T, Haffari G, Hirst M, Marra MA, Condon A, Aparicio S, Shah SP.

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