MultiPhen performs genetic association tests between SNPs (one-at-a-time) and multiple phenotypes (separately or in joint model)
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PLoS One. 2012;7(5):e34861. doi: 10.1371/journal.pone.0034861. Epub 2012 May 2.
MultiPhen: joint model of multiple phenotypes can increase discovery in GWAS.
O’Reilly PF, Hoggart CJ, Pomyen Y, Calboli FC, Elliott P, Jarvelin MR, Coin LJ.